Slab and surface adsorption
Take Platinum as an example, a series of modeling is performed:
- Load file from database: click
File→Load from Online Databasein the menu, clickPt→Search→Loadin the pop-up window; - Build supercell: Click
Modify→Build Supercellin the menu, and set the supercell size in the pop-up window; - Cleave surface: click
Build→Cleave Surfacein the menu, set the cleave plane and its position and slab thickness in the pop-up window, clickCleave, set the vacuum in the pop-up window, clickApplyto preview (→ Adjust Position) →Ok; - Fix the atoms away from surface: In the toolbar, click
to activate the selection mode, drag to select the layers of atoms which are away from surface → click
Modify→Edit Constraintsin the menu → Fix the X/Y/Z Position in the pop-up window; - Surface adsorption of single atom: Click
Build→Add Atomsin the menu, select element and input coordinates of the atom which will be added ( you can also clickin the toolbar to add atoms);
- Surface adsorption of small molecules: Click
Build→Sketch Moleculein the menu, draw a molecule, then clickOptimize→Appendto append this molecule into current structure. In the toolbar, clickto activate the molecule dragging mode, drag the molecule to the specified position. You can also click
in the toolbar to fine-tune the position of the molecule.
Import the unit cell | Dilation | Cut the surface |
Fixed base vector | Adsorption of single atoms | Adsorbs small molecules |
Import the unit cell
Dilation
Cut the surface
Fixed base vector
Adsorption of single atoms
Adsorbs small molecules